about the aim of the task

about the aim of the task  

  By: WZH_11 on March 30, 2021, 7:41 a.m.

After reading the detail about Task 1, I still have some questions about it. What is the aim of Task 1? To locate the slices that have PVS in the entire MRI scans? And what is the ground truth Also, I find that the 'background' is labeled as 0 and the EPVS is labeld as 1. I don't understand the meaning of 'background' and the 'EPVS'.

Would you like to explain the questions above? I would really appreciate it if you reply

 Last edited by: WZH_11 on Aug. 15, 2023, 12:55 p.m., edited 1 time in total.

Re: about the aim of the task  

  By: kvanwijnen on April 2, 2021, 1:16 p.m.

Thanks for your message!

The aim of Task 1 is to develop an automated method that segments enlarged perivascular spaces in the full brain based on MRI scans (the available sequences are T1w, T2w and FLAIR). So based on the MRI scans the method should output a semantic segmentation of the same size as 1 input scan. When thresholded at 0.5 this semantic segmentation should be a binary segmentation mask with voxels that are 0 if they belong to the background and 1 for enlarged perivascular spaces.

The training set consists of cases with different annotation types that can be used to develop/train this method. Participants can choose which annotation types they use and which cases. E.g. only cases with segmentations can be used, which means less cases can be used for training; or all cases can be used and only the counts (weakly supervised methods); or a combination of all annotation types can be used; etc. The ground truth is the PVSSeg nifti, but only for the parts of the scan indicated in the region masks annotations are provided. There is no full ground truth given in the training set. Background voxels are voxels that are not enlarged perivascular spaces, so anything that is not an enlarged perivascular space.

We recently added some extra information on this task and the available annotations on this page: https://valdo.grand-challenge.org/Task1/

Hope it is more clear now! Otherwise please let us know!

Re: about the aim of the task  

  By: WZH_11 on April 14, 2021, 8:28 a.m.

thanks for answerng. I have one more question. Do we need 3 models for 3 sepcific tasks or only 1 model for all 3 tasks?

Re: about the aim of the task  

  By: kvanwijnen on April 20, 2021, 8:03 a.m.

Thank you for your question! For every task you will need to submit a docker, but you are free to use the same method/docker for multiple tasks. So 1 method for all 3 tasks or 1 method per task is both fine.

Re: about the aim of the task  

  By: WZH_11 on May 2, 2021, 2:23 a.m.

thank you so much!!!