Calcium scoring in CT showing the heart

Logo for Calcium scoring in CT showing the heart


Last updated:
May 6, 2022, 2:32 p.m.
Associated publication:
van Velzen SGM, Lessmann N, Velthuis BK, et al.. Deep Learning for Automatic Calcium Scoring in CT: Validation Using Multiple Cardiac CT and Chest CT Protocols. Radiology. 2020;295(1):66-79.
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This algorithm performs calcium scoring in non-contrast-enhanced computed tomography (CT) scans. Additional to a total score for coronary calcium, it provides scores per anatomical location, i.e. left anterior descending, left circumflex, right coronary artery and thoracic aorta. More information on the data and performance of the method can be found in our publication.


This is a fully automatic deep learning based calcium scoring method. The method consists of two consecutive convolutional neural networks (CNN). The first one has a large field of view due to dilated convolutions and predicts lesion candidates: voxels that are likely calcifications. This CNN also provides anatomical labels. The second CNN predicts whether candidate voxels are truly clacifications.

The final output consists of volume and Agatston scores for total coronary calcium and for each label separately.

For more information please refer to the publication "Deep Learning for Automatic Calcium Scoring in CT: Validation Using Multiple Cardiac CT and Chest CT Protocols"

Validation and Performance

This method has been evaluated using a large set of CT scans with various imaging protocols including cardiac CT, PET attenuation correction CT, diagnostic chest CT, radiotherapy treatment planning CT and calcium screening CT.

CT type (n) CAC LAD LCX RCA Aorta
Cardiac CT (529) Sensitivity 0.93 0.93 0.86 0.91 0.86
Volume ICC 0.99 0.97 0.91 0.98 0.96
Agatston ICC 0.99
PET attenuation correction CT (200) Sensitivity 0.92 0.94 0.78 0.92 0.84
Volume ICC 0.97 0.90 0.82 0.97 0.97
Agatston ICC 0.97
Diagnostic chest CT (291) Sensitivity 0.92 0.93 0.73 0.90 0.90
Volume ICC 0.98 0.93 0.91 0.97 0.97
Agatston ICC 0.98
Radiotherapy treatment planning CT (841) Sensitivity 0.86 0.95 0.92 0.57 0.95
Volume ICC 0.92 0.99 0.99 0.59 0.99
Agatston ICC 0.85
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Calcium screening CT (2479) Agatston ICC 0.94

Uses and Directions

This algorithm was developed for research purposes only. This algorithm is intended to be used in non-contrast-enhanced CT scans that show the heart.

Standardly scans with 3 mm slice thickness and 1.5 mm increment are used for calcium scoring. Therefore, scans that have different slice thickness and increment will be resampled. If this information is not available from the dicom (or other) header, 3 mm slice thickness and 1.5 mm increment is assumed and no resampling is performed.