Colon Tissue segmentation

14 class colon tissue segmentation network for colon histopathological slides.

Classes that will be segmented

  • Normal epithelium
  • Low-grade dysplastic (LGD) epithelium
  • High-grade dysplastic (HGD)/cancerous epithelium
  • Stroma lamina propria
  • Submucosal stroma
  • Desmoplastic stroma
  • Muscle
  • Nerve
  • Adipose
  • Mucus
  • Necrosis & debris
  • Background

Contact information

Questions related to this algorithm can be addressed to John-Melle Bokhorst

Additional information

Please take the following limitations into account when submitting data to this algorithm: All input images should be in .tif format and contain magnification levels that correspond to 1.0μm pixel spacing (± 0.05). The algorithm will stop if any of the input images miss one of these levels.