lmc_control
About
Creator:
Contact email:
Image Version:
7ce3c202-01ac-46d7-8fd4-4878e8e3a187
Last updated:
April 19, 2024, 4:22 p.m.
Inputs:
- Organelles Transmitted-Light OME-TIFF (Transmitted light images of organelles in OME-TIFF format, captured using Bright Field, Phase Contrast, or Differential Interference Contrast modalities)
Outputs:
- Nucleus Fluorescence OME-TIFF (Fluorescence microscopy image targetting the nucleus, stored in OME-TIFF format)
- Mitochondria Fluorescence OME-TIFF (Fluorescence microscopy image targetting the mitochondria, stored in OME-TIFF format)
- Actin Fluorescence OME-TIFF (Fluorescence microscopy image targetting the actin microfilaments, stored in OME-TIFF format.)
- Tubulin Fluorescence OME-TIFF (Fluorescence microscopy image highlighting the tubulin microtubules, stored in OME-TIFF format)
Challenge Performance
| Date | Challenge | Phase | Rank |
|---|---|---|---|
| April 12, 2024 | lightmycells | Phase 1 | 11 |
| April 19, 2024 | lightmycells | Phase 2 | 1 |
Model Facts
Summary
github repo TBD
Mechanism
TBD
Validation and Performance
| nucleus.SSIM (Position) | nucleus.MAE (Position) | nucleus.PCC (Position) | nucleus.E_dist (Position) | nucleus.C_dist (Position) | |
|---|---|---|---|---|---|
| test set | 0.7624 (1) | 0.0612 (1) | 0.7438 (4) | 164.8783 (1) | 0.1769 (4) |
Uses and Directions
This algorithm was developed for research purposes only.
Warnings
The model is not generalized enough yet, it will predict fuzzy output with some input data type.
Common Error Messages
Left empty by the Algorithm Editors
Information on this algorithm has been provided by the Algorithm Editors, following the Model Facts labels guidelines from Sendak, M.P., Gao, M., Brajer, N. et al. Presenting machine learning model information to clinical end users with model facts labels. npj Digit. Med. 3, 41 (2020). 10.1038/s41746-020-0253-3