Pulmonary Lobe Segmentation


Logo for Pulmonary Lobe Segmentation

About

Creators:
Contact email:
Version:
bc4127a3-d847-4c19-9aad-ecdb353d96a2
Last updated:
June 22, 2021, 12:56 a.m.
Associated publication:
Xie W, Jacobs C, Charbonnier J-P, van Ginneken B. Relational Modeling for Robust and Efficient Pulmonary Lobe Segmentation in CT Scans. IEEE Trans Med Imaging. 2020;39(8):2664-2675.
Inputs:
  • Generic Medical Image 
Outputs:
  • Generic Overlay  (An overlay of unknown type. Legacy, please use alternative interfaces.)
  • Results JSON File  (A collection of results of unknown type. Legacy, if possible please use alternative interfaces.)

Automatic segmenting of pulmonary lobes from a given chest CT scan using a contextual two-stage U-Net architecture, validated on COPD and COVID-19 scans. The paper is available on https://arxiv.org/abs/2004.07443 and in the COVID-19 special issue of IEEE Transactions on Medical Imaging.

Important Notes:

The accepted input format is *.mha. Dicom should also work, you can zip multiple dicom files.

Contact Information

weiyi.xie@radboudumc.nl

Uses and Directions

This algorithm was developed for research purposes only.