Test submission to HANCOTHON25

About

Contact email:

test@googlemail.com

Image Version:

d9b971d5-eda9-4df8-99e5-01dd359b8c0c — July 29, 2025

Model Version:

1ad6cee0-2e5d-4270-a897-30b61f59ea5c — July 29, 2025

Summary

Test-algorithm to check if everything is set up correctly.

Mechanism

Only binary prediction, independent of the input data.

Interfaces

This algorithm implements all of the following input-output combinations:

Inputs Outputs

	Inputs	Outputs
1	HANCOCK blood data Description Blood sample analysis for a patient from the HANCOCK dataset Kind Anything Read from `/input/hancock-blood-data.json` Example { "key": "value", "None": null } HANCOCK blood data HANCOCK Clinical Data Description Clinical data for a patient from the HANCOCK dataset Kind Anything Read from `/input/hancock-clinical-data.json` Example { "key": "value", "None": null } HANCOCK Clinical Data HANCOCK Pathological Data Description Pathological data for a patient from the HANCOCK dataset Kind Anything Read from `/input/hancock-pathological-data.json` Example { "key": "value", "None": null } HANCOCK Pathological Data HANCOCK Primary Tumor WSI Embeddings Description Pre-extracted patch-level embeddings from a primary tumor Whole Slide Image (WSI), computed using the UNI model, for a patient from the HANCOCK dataset. Kind Anything Read from `/input/hancock-primary-tumor-wsi-embeddings.json` Example { "key": "value", "None": null } HANCOCK Primary Tumor WSI Embeddings HANCOCK Lymph Node WSI Embeddings Description Pre-extracted patch-level embeddings from a lymph node Whole Slide Image (WSI), computed using the UNI model, for a patient from the HANCOCK dataset. Kind Anything Read from `/input/hancock-lymph-node-wsi-embeddings.json` Example { "key": "value", "None": null } HANCOCK Lymph Node WSI Embeddings HANCOCK TMA Tumor Center Core HE 1 Description Tissue Microarray (TMA) tumor center core with HE staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_HE_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_HE_1/<uuid>.tif` HANCOCK TMA Tumor Center Core HE 1 HANCOCK TMA Tumor Center Core HE 2 Description Tissue Microarray (TMA) tumor center core with HE staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_HE_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_HE_2/<uuid>.tif` HANCOCK TMA Tumor Center Core HE 2 HANCOCK TMA Tumor Center Core CD3 1 Description Tissue Microarray (TMA) tumor center core with CD3 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD3_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD3_1/<uuid>.tif` HANCOCK TMA Tumor Center Core CD3 1 HANCOCK TMA Tumor Center Core CD3 2 Description Tissue Microarray (TMA) tumor center core with CD3 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD3_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD3_2/<uuid>.tif` HANCOCK TMA Tumor Center Core CD3 2 HANCOCK TMA Tumor Center Core CD8 1 Description Tissue Microarray (TMA) tumor center core with CD8 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD8_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD8_1/<uuid>.tif` HANCOCK TMA Tumor Center Core CD8 1 HANCOCK TMA Tumor Center Core CD8 2 Description Tissue Microarray (TMA) tumor center core with CD8 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD8_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD8_2/<uuid>.tif` HANCOCK TMA Tumor Center Core CD8 2 HANCOCK TMA Tumor Center Core CD56 1 Description Tissue Microarray (TMA) tumor center core with CD56 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD56_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD56_1/<uuid>.tif` HANCOCK TMA Tumor Center Core CD56 1 HANCOCK TMA Tumor Center Core CD56 2 Description Tissue Microarray (TMA) tumor center core with CD56 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD56_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD56_2/<uuid>.tif` HANCOCK TMA Tumor Center Core CD56 2 HANCOCK TMA Tumor Center Core CD68 1 Description Tissue Microarray (TMA) tumor center core with CD68 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD68_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD68_1/<uuid>.tif` HANCOCK TMA Tumor Center Core CD68 1 HANCOCK TMA Tumor Center Core CD68 2 Description Tissue Microarray (TMA) tumor center core with CD68 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD68_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD68_2/<uuid>.tif` HANCOCK TMA Tumor Center Core CD68 2 HANCOCK TMA Tumor Center Core CD163 1 Description Tissue Microarray (TMA) tumor center core with CD163 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD163_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD163_1/<uuid>.tif` HANCOCK TMA Tumor Center Core CD163 1 HANCOCK TMA Tumor Center Core CD163 2 Description Tissue Microarray (TMA) tumor center core with CD163 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_CD163_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_CD163_2/<uuid>.tif` HANCOCK TMA Tumor Center Core CD163 2 HANCOCK TMA Tumor Center Core MHC-1 1 Description Tissue Microarray (TMA) tumor center core with MHC-1 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_MHC-1_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_MHC-1_1/<uuid>.tif` HANCOCK TMA Tumor Center Core MHC-1 1 HANCOCK TMA Tumor Center Core MHC-1 2 Description Tissue Microarray (TMA) tumor center core with MHC-1 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_MHC-1_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_MHC-1_2/<uuid>.tif` HANCOCK TMA Tumor Center Core MHC-1 2 HANCOCK TMA Tumor Center Core PD-L1 1 Description Tissue Microarray (TMA) tumor center core with PD-L1 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_PD-L1_1/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_PD-L1_1/<uuid>.tif` HANCOCK TMA Tumor Center Core PD-L1 1 HANCOCK TMA Tumor Center Core PD-L1 2 Description Tissue Microarray (TMA) tumor center core with PD-L1 staining for a patient from the HANCOCK dataset. Kind Image Read from `/input/images/hancock_tma_tumor_center_PD-L1_2/<uuid>.mha` or `/input/images/hancock_tma_tumor_center_PD-L1_2/<uuid>.tif` HANCOCK TMA Tumor Center Core PD-L1 2 HANCOCK Surgery Text Data Description Surgery related text data in English. It contains the history, report, and description, if accessible. Kind Anything Read from `/input/hancock-surgery-text-data.json` Example { "key": "value", "None": null } HANCOCK Surgery Text Data	2-year Recurrence After Diagnosis Description Binary classification of recurrence two years after initial diagnosis. Options are "recurrence" or "no recurrence". Kind String Write to `/output/2-year-recurrence.json` Example "Example String" 2-year Recurrence After Diagnosis

HANCOCK blood data

Description

Blood sample analysis for a patient from the HANCOCK dataset

Kind

Anything

Read from

/input/hancock-blood-data.json

Example

{
  "key": "value",
  "None": null
}

HANCOCK Clinical Data

Description

Clinical data for a patient from the HANCOCK dataset

Kind

Anything

Read from

/input/hancock-clinical-data.json

Example

{
  "key": "value",
  "None": null
}

HANCOCK Pathological Data

Description

Pathological data for a patient from the HANCOCK dataset

Kind

Anything

Read from

/input/hancock-pathological-data.json

Example

{
  "key": "value",
  "None": null
}

HANCOCK Primary Tumor WSI Embeddings

Description

Pre-extracted patch-level embeddings from a primary tumor Whole Slide Image (WSI), computed using the UNI model, for a patient from the HANCOCK dataset.

Kind

Anything

Read from

/input/hancock-primary-tumor-wsi-embeddings.json

Example

{
  "key": "value",
  "None": null
}

HANCOCK Lymph Node WSI Embeddings

Description

Pre-extracted patch-level embeddings from a lymph node Whole Slide Image (WSI), computed using the UNI model, for a patient from the HANCOCK dataset.

Kind

Anything

Read from

/input/hancock-lymph-node-wsi-embeddings.json

Example

{
  "key": "value",
  "None": null
}

HANCOCK TMA Tumor Center Core HE 1

Description: Tissue Microarray (TMA) tumor center core with HE staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_HE_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_HE_1/<uuid>.tif

HANCOCK TMA Tumor Center Core HE 2

Description: Tissue Microarray (TMA) tumor center core with HE staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_HE_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_HE_2/<uuid>.tif

HANCOCK TMA Tumor Center Core CD3 1

Description: Tissue Microarray (TMA) tumor center core with CD3 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD3_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD3_1/<uuid>.tif

HANCOCK TMA Tumor Center Core CD3 2

Description: Tissue Microarray (TMA) tumor center core with CD3 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD3_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD3_2/<uuid>.tif

HANCOCK TMA Tumor Center Core CD8 1

Description: Tissue Microarray (TMA) tumor center core with CD8 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD8_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD8_1/<uuid>.tif

HANCOCK TMA Tumor Center Core CD8 2

Description: Tissue Microarray (TMA) tumor center core with CD8 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD8_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD8_2/<uuid>.tif

HANCOCK TMA Tumor Center Core CD56 1

Description: Tissue Microarray (TMA) tumor center core with CD56 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD56_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD56_1/<uuid>.tif

HANCOCK TMA Tumor Center Core CD56 2

Description: Tissue Microarray (TMA) tumor center core with CD56 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD56_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD56_2/<uuid>.tif

HANCOCK TMA Tumor Center Core CD68 1

Description: Tissue Microarray (TMA) tumor center core with CD68 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD68_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD68_1/<uuid>.tif

HANCOCK TMA Tumor Center Core CD68 2

Description: Tissue Microarray (TMA) tumor center core with CD68 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD68_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD68_2/<uuid>.tif

HANCOCK TMA Tumor Center Core CD163 1

Description: Tissue Microarray (TMA) tumor center core with CD163 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD163_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD163_1/<uuid>.tif

HANCOCK TMA Tumor Center Core CD163 2

Description: Tissue Microarray (TMA) tumor center core with CD163 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_CD163_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_CD163_2/<uuid>.tif

HANCOCK TMA Tumor Center Core MHC-1 1

Description: Tissue Microarray (TMA) tumor center core with MHC-1 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_MHC-1_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_MHC-1_1/<uuid>.tif

HANCOCK TMA Tumor Center Core MHC-1 2

Description: Tissue Microarray (TMA) tumor center core with MHC-1 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_MHC-1_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_MHC-1_2/<uuid>.tif

HANCOCK TMA Tumor Center Core PD-L1 1

Description: Tissue Microarray (TMA) tumor center core with PD-L1 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_PD-L1_1/<uuid>.mha or /input/images/hancock_tma_tumor_center_PD-L1_1/<uuid>.tif

HANCOCK TMA Tumor Center Core PD-L1 2

Description: Tissue Microarray (TMA) tumor center core with PD-L1 staining for a patient from the HANCOCK dataset.
Kind: Image
Read from: /input/images/hancock_tma_tumor_center_PD-L1_2/<uuid>.mha or /input/images/hancock_tma_tumor_center_PD-L1_2/<uuid>.tif

HANCOCK Surgery Text Data

Description

Surgery related text data in English. It contains the history, report, and description, if accessible.

Kind

Anything

Read from

/input/hancock-surgery-text-data.json

Example

{
  "key": "value",
  "None": null
}

2-year Recurrence After Diagnosis

Description

Binary classification of recurrence two years after initial diagnosis. Options are "recurrence" or "no recurrence".

Kind

String

Write to

/output/2-year-recurrence.json

Example

"Example String"

Validation and Performance

Left empty by the Algorithm Editors

Uses and Directions

This algorithm was developed for research purposes only.

Warnings

Left empty by the Algorithm Editors

Common Error Messages

Left empty by the Algorithm Editors

Information on this algorithm has been provided by the Algorithm Editors, following the Model Facts labels guidelines from Sendak, M.P., Gao, M., Brajer, N. et al. Presenting machine learning model information to clinical end users with model facts labels. npj Digit. Med. 3, 41 (2020). 10.1038/s41746-020-0253-3

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