By: Irem on Dec. 19, 2024, 5:37 p.m.
Hello again,
Our submission to the live leaderboard failed despite passing the debug-phase fine.
I have some ideas as to what might have gone wrong but I am not completely sure.
Is it possible to get some feedback about the logs?
Thank you.
By: LindaSt on Dec. 20, 2024, 9:54 a.m.
Hi! This is what I see: Output file 'detected-lymphocytes.json' was not produced
STOUT
2024-12-19T17:21:57.907000+00:00 Creating new Ultralytics Settings v0.0.6 file ✅
2024-12-19T17:21:57.907000+00:00 View Ultralytics Settings with 'yolo settings' or at '/home/user/.config/Ultralytics/settings.json'
2024-12-19T17:21:57.907000+00:00 Update Settings with 'yolo settings key=value', i.e. 'yolo settings runs_dir=path/to/dir'. For help see https://docs.ultralytics.com/quickstart/#ultralytics-settings.
STERR
2024-12-19T17:21:53.903000+00:00 Traceback (most recent call last):
2024-12-19T17:21:53.903000+00:00 File "./utils/make_pure_patches.py", line 136, in <module>
2024-12-19T17:21:53.903000+00:00 tiff_to_zarr(image_name, image_zarr_path)
2024-12-19T17:21:53.903000+00:00 File "./utils/make_pure_patches.py", line 66, in tiff_to_zarr
2024-12-19T17:21:53.903000+00:00 image = tif.asarray()
2024-12-19T17:21:53.905000+00:00 File "/venv/lib/python3.8/site-packages/tifffile/tifffile.py", line 4307, in asarray
2024-12-19T17:21:53.905000+00:00 result = page0.asarray(out=out, maxworkers=maxworkers)
2024-12-19T17:21:53.905000+00:00 File "/venv/lib/python3.8/site-packages/tifffile/tifffile.py", line 8953, in asarray
2024-12-19T17:21:53.905000+00:00 result = create_output(out, keyframe.shaped, keyframe._dtype)
2024-12-19T17:21:53.905000+00:00 File "/venv/lib/python3.8/site-packages/tifffile/tifffile.py", line 22372, in create_output
2024-12-19T17:21:53.906000+00:00 return numpy.zeros(shape, dtype)
2024-12-19T17:21:53.906000+00:00 numpy.core._exceptions.MemoryError: Unable to allocate 224. GiB for an array with shape (1, 1, 294144, 272128, 3) and data type uint8
2024-12-19T17:21:57.907000+00:00 Traceback (most recent call last):
2024-12-19T17:21:57.907000+00:00 File "./utils/results_with_normalization_roi.py", line 88, in <module>
2024-12-19T17:21:57.907000+00:00 mask_zarr = zarr.open(mask_zarr_path, mode="r")
2024-12-19T17:21:57.907000+00:00 File "/venv/lib/python3.8/site-packages/zarr/convenience.py", line 130, in open
2024-12-19T17:21:57.907000+00:00 raise PathNotFoundError(path)
2024-12-19T17:21:57.907000+00:00 zarr.errors.PathNotFoundError: nothing found at path ''
