Issue with file "training_set_metastatic_roi_088_nuclei.geojson"

Issue with file "training_set_metastatic_roi_088_nuclei.geojson"  

  By: marti on Feb. 13, 2025, 4:53 p.m.

Dear organisers,

First of all, thank you very much for providing this dataset for the challenge. I wanted to point out a potential issue with file "training_set_metastatic_roi_088_nuclei.geojson", as when I load it into QuPath it says "com.google.gson.JsonParseException: Unable to parse PathClass from Json TreeReader at path $". I think the file has gotten corrupted because the "color" attribute of one of the nucleuses is missing.

Best wishes, Martina

Re: Issue with file "training_set_metastatic_roi_088_nuclei.geojson"  

  By: mschuiveling on Feb. 14, 2025, 7:31 a.m.

Dear Martina, Thank you for letting us know. I will upload a new version in the zenodo repository. There was one nuclei_apoptosis with a missing color. I hope this was not to big of an issue for you to work with the dataset! Kind regards, Mark