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Szymon Płotka

plotkaszymon

  •  Netherlands
  •  University of Amsterdam
  •  Informatics Institute
Statistics
  • Member for 7 years, 2 months

Activity Overview

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VESSEL12
Challenge User

The VESSEL12 challenge compares methods for automatic (and semi-automatic) segmentation of blood vessels in the lungs from CT images.

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CAMELYON17
Challenge User

Automated detection and classification of breast cancer metastases in whole-slide images of histological lymph node sections. This task has high clinical relevance and would normally require extensive microscopic assessment by pathologists.

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DRIVE
Challenge User

Develop a system to automatically segment vessels in human retina fundus images.

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HC18
Challenge User

Automated measurement of fetal head circumference using 2D ultrasound images

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Decathlon
Challenge User

The Medical Segmentation Decathlon challenge tests the generalisability of machine learning algorithms when applied to 10 different semantic segmentation task.

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LNDb Challenge
Challenge User

Lung cancer screening and Fleischner follow-up determination in chest CT through nodule detection, segmentation and characterization

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RibFrac
Challenge User

Rib Fracture Detection and Classification Challenge: A large-scale benchmark of 660 CT scans with ~5,000 rib fractures (around 80Gb)

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A-AFMA
Challenge User

Prenatal ultrasound (US) measurement of amniotic fluid is an important part of fetal surveillance as it provides a non-invasive way of assessing whether there is oligohydramnios (insufficient amniotic fluid) and polyhydramnios (excess amniotic fluid), which are associated with numerous problems both during pregnancy and after birth. In this Image Analysis Challenge, we aim to attract attention from the image analysis community to work on the problem of automated measurement of the MVP using the predefined ultrasound video clip based on a linear-sweep protocol [1]. We define two tasks. The first task is to automatically detect amniotic fluid and the maternal bladder. The second task is to identify the appropriate points for MVP measurement given the selected frame of the video clip, and calculate the length of the connected line between these points. The data was collected from women in the second trimester of pregnancy, as part of the PURE study at the John Radcliffe Hospital in Oxford, UK.

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COVID-19 LUNG CT LESION SEGMENTATION CHALLENGE - 2020
Challenge User

This challenge will create the platform to evaluate emerging methods for the segmentation and quantification of lung lesions caused by SARS-CoV-2 infection from CT images.

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EndoCV2021
Challenge User

Endoscopy Computer Vision Challenge 2021

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FLARE21
Challenge User

Fast and Low GPU memory Abdominal oRgan sEgmentation Challenge

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FeTA - Fetal Tissue Annotation Challenge
Challenge User

Fetal Tissue Annotation Challenge

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QUBIQ2021
Challenge User

Quantification of Uncertainties in Biomedical Image Segmentation Challenge 2021

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EndoCV2022
Challenge User

Developing methods for "detection task'' and ''segmentation task'' for endoscopic video sequence data

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MELA2022
Challenge User

MICCAI 2022 MELA Challenge: A Large-Scale Detection Benchmark of 1,100 CT Scans for Mediastinal Lesion Analysis

Parse2022 Logo
Parse2022
Challenge User

It is of significant clinical interest to study pulmonary artery structures in the field of medical image analysis. One prerequisite step is to segment pulmonary artery structures from CT with high accuracy and low time-consuming. The segmentation of pulmonary artery structures benefits the quantification of its morphological changes for diagnosis of pulmonary hypertension and thoracic surgery. However, due to the complexity of pulmonary artery topology, automated segmentation of pulmonary artery topology is a challenging task. Besides, the open accessible large-scale CT data with well labeled pulmonary artery are scarce (The large variations of the topological structures from different patients make the annotation an extremely challenging process). The lack of well labeled pulmonary artery hinders the development of automatic pulmonary artery segmentation algorithm. Hence, we try to host the first Pulmonary ARtery SEgmentation challenge in MICCAI 2022 (Named Parse2022) to start a new research topic.

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INSTANCE2022
Challenge User

The 2022 Intracranial Hemorrhage Segmentation Challenge on Non-Contrast head CT (NCCT)

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3D Teeth Scan Segmentation and Labeling Challenge MICCAI2022
Challenge User

Computer-aided design (CAD) tools have become increasingly popular in modern dentistry for highly accurate treatment planning. In particular, in orthodontic CAD systems, advanced intraoral scanners (IOSs) are now widely used as they provide precise digital surface models of the dentition. Such models can dramatically help dentists simulate teeth extraction, move, deletion, and rearrangement and therefore ease the prediction of treatment outcomes. Although IOSs are becoming widespread in clinical dental practice, there are only few contributions on teeth segmentation/labeling available in the literature and no publicly available database. A fundamental issue that appears with IOS data is the ability to reliably segment and identify teeth in scanned observations. Teeth segmentation and labelling is difficult as a result of the inherent similarities between teeth shapes as well as their ambiguous positions on jaws.

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MICCAI FLARE 2022
Challenge User

MICCAI 2022 Fast and Low-resource semi-supervised Abdominal oRgan sEgmentation (FLARE) Challenge

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Surface Learning for Clinical Neuroimaging
Challenge User

Prediction of developmental phenotypes (age at birth and cognitive test scores) from cortical surface imaging data

AMOS22 Logo
Multi-Modality Abdominal Multi-Organ Segmentation Challenge 2022
Challenge User

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Surgical Tool Localization in endoscopic videos
Challenge User

ATM22 Logo
Multi-site, Multi-Domain Airway Tree Modeling (ATM’22)
Challenge User

Airway segmentation is a crucial step for the analysis of pulmonary diseases including asthma, bronchiectasis, and emphysema. The accurate segmentation based on X-Ray computed tomography (CT) enables the quantitative measurements of airway dimensions and wall thickness, which can reveal the abnormality of patients with chronic obstructive pulmonary disease (COPD). Besides, the extraction of patient-specific airway models from CT images is required for navigatiisted surgery.

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FH-PS-AOP challenge
Challenge User

Fetal Head and Pubic Symphysis Segmentation Challenge

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ToothFairy: Cone-Beam Computed Tomography Segmentation Challenge
Challenge User

This is the first edition of the ToothFairy challenge organized by the University of Modena and Reggio Emilia with the collaboration of Raudboud University. This challenge aims at pushing the development of deep learning frameworks to segment the Inferior Alveolar Canal (IAC) by incrementally extending the amount of publicly available 3D-annotated Cone Beam Computed Tomography (CBCT) scans. CBCT modality is becoming increasingly important for treatment planning and diagnosis in implant dentistry and maxillofacial surgery. The three-dimensional information acquired with CBCT can be crucial to plan a vast number of surgical interventions with the aim of preserving noble anatomical structures such as the Inferior Alveolar Canal (IAC), which contains the homonymous nerve (Inferior Alveolar Nerve, IAN). Deep learning models can support medical personnel in surgical planning procedures by providing a voxel-level segmentation of the IAN automatically extracted from CBCT scans.

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LNQ2023
Challenge User

Accurate lymph node size estimation is critical for staging cancer patients, initial therapeutic management, and in longitudinal scans, assessing response to therapy. Current standard practice for quantifying lymph node size is based on a variety of criteria that use unidirectional or bidirectional measurements on just one or a few nodes, typically on just one axial slice. But humans have hundreds of lymph nodes, any number of which may be enlarged to various degrees due to disease or immune response. While a normal lymph node may be approximately 5mm in diameter, a diseased lymph node may be several cm in diameter. The mediastinum, the anatomical area between the lungs and around the heart, may contain ten or more lymph nodes, often with three or more enlarged greater than 1cm. Accurate segmentation in 3D would provide more information to evaluate lymph node disease.

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ARCADE-MICCAI2023
Challenge User

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SEG.A. - Segmentation of the Aorta
Challenge User

Segmentation, modeling and visualization of the arterial tree are still a challenge in medical image analysis. The main track of this challenge deals with the fully automatic segmentation of the aortic vessel tree in computed tomography images. Optionally, teams can submit tailored solutions for meshing and visualization of the vessel tree.

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Surgical Planning in Pediatric Neuroblastoma
Challenge User

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SegRap 2023
Challenge User

A segmentation challenge with 200 patients (two modalities of CT images, 45 OARs and 2 GTVs).

BONBID-HIE2023 Logo
Hypoxic Ischemic Encephalopathy Lesion Segmentation Challenge
Challenge User

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PANORAMA
Challenge User

Artificial Intelligence and Radiologists at Pancreatic Cancer Diagnosis in CT

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Universal Lesion Segmentation Challenge '23
Challenge User

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Abdominal Circumference Operator-agnostic UltraSound measurement
Challenge User

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Ischemic Stroke Lesion Segmentation Challenge 2024
Challenge User

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ToothFairy2: Multi-Structure Segmentation in CBCT Volumes
Challenge User

This is the second edition of the ToothFairy challenge organized by the University of Modena and Reggio Emilia with the collaboration of Radboud University Medical Center. The challenge is hosted by grand-challenge and is part of MICCAI2024.

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Pelvic Bone Fragments with Injuries Segmentation Challenge
Challenge User

Pelvic fracture segmentation in CT and X-ray

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Cross-Organ and Cross-Scanner Adenocarcinoma Segmentation
Challenge User