Re: submission log

Hi,

These are the outputs for the three submissions you made:

---- Jan. 14, 2022, 9:50 p.m. ---- Stdout 2022-01-15T00:21:14+00:00 ==> Using cuda 2022-01-15T00:21:14+00:00 ==> Initializing model 2022-01-15T00:21:14+00:00 ==> Weights loaded 2022-01-15T00:21:14+00:00 ==> Forward pass done

Stderr 2022-01-15T00:21:08+00:00 HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 0: 2022-01-15T00:21:08+00:00 #000: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 370 in itk_H5Fis_hdf5(): unable open file 2022-01-15T00:21:08+00:00 major: File accessibilty 2022-01-15T00:21:08+00:00 minor: Not an HDF5 file 2022-01-15T00:21:08+00:00 #001: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 830 in itk_H5F__is_hdf5(): unable to locate file signature 2022-01-15T00:21:08+00:00 major: File accessibilty 2022-01-15T00:21:08+00:00 minor: Not an HDF5 file 2022-01-15T00:21:08+00:00 #002: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 126 in itk_H5FD_locate_signature(): unable to read file signature 2022-01-15T00:21:08+00:00 major: Low-level I/O 2022-01-15T00:21:08+00:00 minor: Unable to initialize object 2022-01-15T00:21:08+00:00 #003: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 205 in itk_H5FD_read(): driver read request failed 2022-01-15T00:21:08+00:00 major: Virtual File Layer 2022-01-15T00:21:08+00:00 minor: Read failed 2022-01-15T00:21:08+00:00 #004: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 725 in H5FD_sec2_read(): file read failed: time = Sat Jan 15 00:21:08 2022 2022-01-15T00:21:08+00:00 , filename = '/input/images', file descriptor = 23, errno = 21, error message = 'Is a directory', buf = 0x7fffd44db558, total read size = 8, bytes this sub-read = 8, bytes actually read = 18446744073709551615, offset = 0 2022-01-15T00:21:08+00:00 major: Low-level I/O 2022-01-15T00:21:08+00:00 minor: Read failed 2022-01-15T00:21:08+00:00 Could not load images using <evalutils.io.SimpleITKLoader object at 0x7feae1511d90>. 2022-01-15T00:21:09+00:00 HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 0: 2022-01-15T00:21:09+00:00 #000: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 370 in itk_H5Fis_hdf5(): unable open file 2022-01-15T00:21:09+00:00 major: File accessibilty 2022-01-15T00:21:09+00:00 minor: Not an HDF5 file 2022-01-15T00:21:09+00:00 #001: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 830 in itk_H5F__is_hdf5(): unable to locate file signature 2022-01-15T00:21:09+00:00 major: File accessibilty 2022-01-15T00:21:09+00:00 minor: Not an HDF5 file 2022-01-15T00:21:09+00:00 #002: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 126 in itk_H5FD_locate_signature(): unable to read file signature 2022-01-15T00:21:09+00:00 major: Low-level I/O 2022-01-15T00:21:09+00:00 minor: Unable to initialize object 2022-01-15T00:21:09+00:00 #003: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 205 in itk_H5FD_read(): driver read request failed 2022-01-15T00:21:09+00:00 major: Virtual File Layer 2022-01-15T00:21:09+00:00 minor: Read failed 2022-01-15T00:21:09+00:00 #004: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 725 in H5FD_sec2_read(): file read failed: time = Sat Jan 15 00:21:08 2022 2022-01-15T00:21:09+00:00 , filename = '/input/images/color-fundus', file descriptor = 23, errno = 21, error message = 'Is a directory', buf = 0x7fffd44db558, total read size = 8, bytes this sub-read = 8, bytes actually read = 18446744073709551615, offset = 0 2022-01-15T00:21:09+00:00 major: Low-level I/O 2022-01-15T00:21:09+00:00 minor: Read failed 2022-01-15T00:21:09+00:00 Could not load color-fundus using <evalutils.io.SimpleITKLoader object at 0x7feae1511d90>.

Error Message File referable-glaucoma-likelihood.json was not produced

Jan. 17, 2022, 12:46 p.m. Stdout 2022-01-17T12:10:11+00:00 ==> Using cuda 2022-01-17T12:10:11+00:00 ==> Initializing model 2022-01-17T12:10:11+00:00 ==> Weights loaded 2022-01-17T12:10:11+00:00 ==> Forward pass done

Stderr 2022-01-17T12:10:06+00:00 HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 0: 2022-01-17T12:10:06+00:00 #000: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 370 in itk_H5Fis_hdf5(): unable open file 2022-01-17T12:10:06+00:00 major: File accessibilty 2022-01-17T12:10:06+00:00 minor: Not an HDF5 file 2022-01-17T12:10:06+00:00 #001: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 830 in itk_H5F__is_hdf5(): unable to locate file signature 2022-01-17T12:10:06+00:00 major: File accessibilty 2022-01-17T12:10:06+00:00 minor: Not an HDF5 file 2022-01-17T12:10:06+00:00 #002: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 126 in itk_H5FD_locate_signature(): unable to read file signature 2022-01-17T12:10:06+00:00 major: Low-level I/O 2022-01-17T12:10:06+00:00 minor: Unable to initialize object 2022-01-17T12:10:06+00:00 #003: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 205 in itk_H5FD_read(): driver read request failed 2022-01-17T12:10:06+00:00 major: Virtual File Layer 2022-01-17T12:10:06+00:00 minor: Read failed 2022-01-17T12:10:06+00:00 #004: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 725 in H5FD_sec2_read(): file read failed: time = Mon Jan 17 12:10:06 2022 2022-01-17T12:10:06+00:00 , filename = '/input/images', file descriptor = 22, errno = 21, error message = 'Is a directory', buf = 0x7ffc8b5eda88, total read size = 8, bytes this sub-read = 8, bytes actually read = 18446744073709551615, offset = 0 2022-01-17T12:10:06+00:00 major: Low-level I/O 2022-01-17T12:10:06+00:00 minor: Read failed 2022-01-17T12:10:06+00:00 Could not load images using <evalutils.io.SimpleITKLoader object at 0x7f28d9d6f090>. 2022-01-17T12:10:06+00:00 HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 0: 2022-01-17T12:10:06+00:00 #000: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 370 in itk_H5Fis_hdf5(): unable open file 2022-01-17T12:10:06+00:00 major: File accessibilty 2022-01-17T12:10:06+00:00 minor: Not an HDF5 file 2022-01-17T12:10:06+00:00 #001: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 830 in itk_H5F__is_hdf5(): unable to locate file signature 2022-01-17T12:10:06+00:00 major: File accessibilty 2022-01-17T12:10:06+00:00 minor: Not an HDF5 file 2022-01-17T12:10:06+00:00 #002: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 126 in itk_H5FD_locate_signature(): unable to read file signature 2022-01-17T12:10:06+00:00 major: Low-level I/O 2022-01-17T12:10:06+00:00 minor: Unable to initialize object 2022-01-17T12:10:06+00:00 #003: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDint.c line 205 in itk_H5FD_read(): driver read request failed 2022-01-17T12:10:06+00:00 major: Virtual File Layer 2022-01-17T12:10:06+00:00 minor: Read failed 2022-01-17T12:10:06+00:00 #004: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 725 in H5FD_sec2_read(): file read failed: time = Mon Jan 17 12:10:06 2022 2022-01-17T12:10:06+00:00 , filename = '/input/images/color-fundus', file descriptor = 22, errno = 21, error message = 'Is a directory', buf = 0x7ffc8b5eda88, total read size = 8, bytes this sub-read = 8, bytes actually read = 18446744073709551615, offset = 0 2022-01-17T12:10:06+00:00 major: Low-level I/O 2022-01-17T12:10:06+00:00 minor: Read failed 2022-01-17T12:10:06+00:00 Could not load color-fundus using <evalutils.io.SimpleITKLoader object at 0x7f28d9d6f090>. 2022-01-17T12:10:11+00:00 Traceback (most recent call last): 2022-01-17T12:10:11+00:00 File "/opt/conda/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-01-17T12:10:11+00:00 "__main__", mod_spec) 2022-01-17T12:10:11+00:00 File "/opt/conda/lib/python3.7/runpy.py", line 85, in _run_code 2022-01-17T12:10:11+00:00 exec(code, run_globals) 2022-01-17T12:10:11+00:00 File "/opt/algorithm/process.py", line 96, in <module> 2022-01-17T12:10:11+00:00 Vesselsegmentation().process() 2022-01-17T12:10:11+00:00 File "/home/algorithm/.local/lib/python3.7/site-packages/evalutils/evalutils.py", line 183, in process 2022-01-17T12:10:11+00:00 self.process_cases() 2022-01-17T12:10:11+00:00 File "/home/algorithm/.local/lib/python3.7/site-packages/evalutils/evalutils.py", line 191, in process_cases 2022-01-17T12:10:11+00:00 self._case_results.append(self.process_case(idx=idx, case=case)) 2022-01-17T12:10:11+00:00 File "/home/algorithm/.local/lib/python3.7/site-packages/evalutils/evalutils.py", line 279, in process_case 2022-01-17T12:10:11+00:00 SimpleITK.WriteImage(segmented_nodules, str(segmentation_path), True) 2022-01-17T12:10:11+00:00 File "/home/algorithm/.local/lib/python3.7/site-packages/SimpleITK/extra.py", line 394, in WriteImage 2022-01-17T12:10:11+00:00 return writer.Execute(image) 2022-01-17T12:10:11+00:00 File "/home/algorithm/.local/lib/python3.7/site-packages/SimpleITK/SimpleITK.py", line 7503, in Execute 2022-01-17T12:10:11+00:00 return _SimpleITK.ImageFileWriter_Execute(self, *args) 2022-01-17T12:10:11+00:00 TypeError: Wrong number or type of arguments for overloaded function 'ImageFileWriter_Execute'. 2022-01-17T12:10:11+00:00 Possible C/C++ prototypes are: 2022-01-17T12:10:11+00:00 itk::simple::ImageFileWriter::Execute(itk::simple::Image const &) 2022-01-17T12:10:11+00:00 itk::simple::ImageFileWriter::Execute(itk::simple::Image const &,std::string const &,bool,int) 2022-01-17T12:10:11+00:00

Error Message itk::simple::ImageFileWriter::Execute(itk::simple::Image const &,std::string const &,bool,int)

Jan. 19, 2022, 2:49 p.m. Stdout No logs found on stdout

Stderr 2022-01-19T21:59:32+00:00 Traceback (most recent call last): 2022-01-19T21:59:32+00:00 File "/opt/conda/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-01-19T21:59:32+00:00 "__main__", mod_spec) 2022-01-19T21:59:32+00:00 File "/opt/conda/lib/python3.7/runpy.py", line 85, in _run_code 2022-01-19T21:59:32+00:00 exec(code, run_globals) 2022-01-19T21:59:32+00:00 File "/opt/algorithm/process.py", line 148, in <module> 2022-01-19T21:59:32+00:00 from monai.networks.nets import EfficientNetBN 2022-01-19T21:59:32+00:00 ImportError: cannot import name 'EfficientNetBN' from 'monai.networks.nets' (/home/algorithm/.local/lib/python3.7/site-packages/monai/networks/nets/__init__.py)

Error Message ImportError: cannot import name 'EfficientNetBN' from 'monai.networks.nets' (/home/algorithm/.local/lib/python3.7/site-packages/monai/networks/nets/__init__.py)

Hope that helps.

Best regards, Coen

Hi tien.le,

The platform does not allow participants to view logs by default to prevent cheating, as it could be used to reveal test data.

Best regards, Coen