Doubt regarding prostate validation

Doubt regarding prostate validation  

  By: chippy on Nov. 30, 2023, 10:07 a.m.

Hi all, Could you please provide guidance on what should be entered in the 'Repository' field for our algorithm submission? Should we provide a link to the source code on a version control platform, and if so, which platforms are preferred or accepted?

In the 'Algorithm Image' section, is there a specific format or type of image that is preferred cosidering the docker option.

I would also like to understand how to retrieve the error logs for our current submission. Could you please provide guidance on where we can find detailed logs or console outputs? This will help us troubleshoot any issues and improve the overall submission process.

Thanks in advance

Re: Doubt regarding prostate validation  

  By: alvaroparicio on Nov. 30, 2023, 11:11 a.m.

Hi,

Regarding your first question, can you please elaborate more so we can provide you a proper response please? About the second, please check https://github.com/chaimeleon-eu/OpenChallenge/tree/master, you can use .*tar.gz. Regarding the third question you cannot see the logs of your submissions, it's something that the grand-challenge platform does to protect the validation data. You can increase your logging so you can find where it fails. In these situations it is most likely memory usage as that often doesn’t exit cleanly and your container often does not report the process being killed. You can try requesting a larger instance type, up to 32GB. If that is not sufficient then you need to reduce your memory usage.

Hope we could help!

Re: Doubt regarding prostate validation  

  By: chippy on Dec. 1, 2023, 6:19 a.m.

Regarding the first question, what we tried to do was try adding an algorithm using the "Add a new algorithm" option from the Validate Prostate Classification option in the submit tab. We entered a Title, a description and the memory requirements and saved it.

We were redirected to a page asking to "upload a container", on selecting it, we added the container and saved it.

We got a notification saying that "Image validation and upload in progress."

The import status is completed and the image is active.

For Validation submission, we chose the image we uploaded and added a description, But there is an option to add a "Repository, A URL associated with the submission" - what should we add here and on save, what should we expect?

And also how can I see if my image actually works? Will I be notified?

Are these the methods to be followed? Or is it a different approach?

Also, can you explain more about what is meant by this:"You can increase your logging so you can find where it fails. " - and how this can be used to solve the errors?

Thanks again.