Folder structure for the docker image ¶
By: prateek on Nov. 7, 2024, 6:26 p.m.
Can you share the folder with respect to the docker image ?
By: prateek on Nov. 9, 2024, 4:51 a.m.
I’ve set up my Docker image following the folder structure specified in the GitHub repository, but I keep encountering errors during test runs that say no images are found in the input folder.
Could someone confirm the expected directory structure inside the Docker container, or share an example? I want to ensure the input and output paths are configured correctly to match the repository’s guidelines.
By: FazaelAyatollahi on Nov. 13, 2024, 7:58 a.m.
could you please add this folder in your docker folder and check again:
-example_model --> model
-resources
-test
-output
-input
-images
-kidney-transplant-biopsy-wsi-pas --> wsi
-tissue-mask --> masks
I add the folders in github repo too
By: prateek on Nov. 14, 2024, 5:12 a.m.
Hi i did try the structure which you shared still its same like the container is unable to pick the input images being passed. also is this the folder structure expected for test folder
── test/
├── input/
│ ├── A_P000001/
│ │ └── output/
│ │ ├── detected-inflammatory-cells.json
│ │ ├── detected-lymphocytes.json
│ │ └── detected-monocytes.json
│ ├── A_P000002/
│ │ └── (...)
│ └── (...)
├── predictions.json
└── output/
└── metrics.json