Folder structure for the docker image

Folder structure for the docker image  

  By: prateek on Nov. 7, 2024, 6:26 p.m.

Can you share the folder with respect to the docker image ?

 Last edited by: prateek on Nov. 7, 2024, 8:43 p.m., edited 2 times in total.

Re: Folder structure for the docker image  

  By: LindaSt on Nov. 8, 2024, 9:01 a.m.

Hi! I'm note quite sure what you mean by that, could you please elaborate?

Also, check out this page for all information regarding the docker submissions.

Re: Folder structure for the docker image  

  By: prateek on Nov. 9, 2024, 4:51 a.m.

I’ve set up my Docker image following the folder structure specified in the GitHub repository, but I keep encountering errors during test runs that say no images are found in the input folder.

Could someone confirm the expected directory structure inside the Docker container, or share an example? I want to ensure the input and output paths are configured correctly to match the repository’s guidelines.

Re: Folder structure for the docker image  

  By: FazaelAyatollahi on Nov. 13, 2024, 7:58 a.m.

could you please add this folder in your docker folder and check again:

-example_model --> model
-resources
-test
  -output
  -input
    -images
      -kidney-transplant-biopsy-wsi-pas --> wsi   
      -tissue-mask --> masks

I add the folders in github repo too

Re: Folder structure for the docker image  

  By: prateek on Nov. 14, 2024, 5:12 a.m.

Hi i did try the structure which you shared still its same like the container is unable to pick the input images being passed. also is this the folder structure expected for test folder

── test/
    ├── input/
    │   ├── A_P000001/
    │   │   └── output/
    │   │       ├── detected-inflammatory-cells.json
    │   │       ├── detected-lymphocytes.json
    │   │       └── detected-monocytes.json
    │   ├── A_P000002/
    │   │   └── (...)
    │   └── (...)
    ├── predictions.json
    └── output/
        └── metrics.json
 Last edited by: prateek on Nov. 14, 2024, 5:14 a.m., edited 2 times in total.