Permission denied: cannot create regular file

Been trying to figue out this issue for a while. My container cannot write the expected outputs to the the /output folder location:

'/output/melanoma-10-class-nuclei-segmentation.json' '/output/images/melanoma-tissue-mask-segmentation/44795516-254e-4111-8ffc-fdc152f25f1a.tif'

Any help would be appreciated.

Dear QuincyWong,

When I read your logs: https://grand-challenge.org/algorithms/puma-challenge-baseline-track2-20250310/jobs/e4665934-1fea-4c9d-8a71-a35b93cd28c1/

It seems like your code tries to download a checkpoint from hugging face. The container runs in an offline environment so it might be that you need to include the checkpoint in your container. If this does not help please let me know because then we will check with the GC team.

Kind regards,

Mark

Thanks for the reply. I've update the container and now and should produce the (original) indicated error again.

Now your containers does not produces any logs. Did your container function correct?

Hello,

is it possible to check if there was a .json and .tif created in the /opt/app/src/PUMA2024_CellClassifier/ folder?

Unfortunately, the only thing we can check is the logs produced by the container you uploaded. I am unable to look into specific files generated within the container.