Code base structure for submitting to the Final Phase

Code base structure for submitting to the Final Phase  

  By: LuukBoulogne on Feb. 23, 2022, 4:40 p.m.

Dear participants,

Although there is still a month left for the Qualification phase, we would like to already inform you about the structure that submissions to the Final phase should adhere to. A GitHub repository with a tutorial on how to structure your codebase for submitting to the Final phase of the challenge is now available here.
You can use the inference container that results from this tutorial to submit to the Qualification phase as well.

Best, Luuk

Re: Code base structure for submitting to the Final Phase  

  By: simon.j on Feb. 24, 2022, 9:02 a.m.

Hello Luuk,

I have some questions regarding the final phase:

  1. What is the criteria to be qualified ? It is mentionned The best-performing teams will be invited to participate in the final round, what does it mean ?
  2. How many training runs are we allowed to perform during this phase ?
  3. It is mentionned that we will receive results of [our] algorithm on the validation fold of the public training data. Did you mean the 200 patients from the test set ?
  4. Is it going to be possible to access to the logs of the training runs ? Among the 200 patients of the public test set, only 118 are covid positive with 30 severe cases (see previous post here). The AUC on this small subset has a high variance* and might not be the best criteria to the select a model. Accessing the logs of the training runs would permit to access to cross-validation performances on 9,000 patients. In addition, training if much more difficult than inference and accessing the logs will certainly be helpful for debugging.
  5. How many solutions will be selected for the final rankings ? One per participant / team ? All the proposed solutions ?

Thanks, Simon

*Following this paper, an upper bound of the variance is AUC * (1 - AUC) / min(n-positives, n-negatives). If we take AUC = 0.80 we get σ-max =7.3% for the 200 patients of the leaderboard test set, and σ-max = 1.1% for the 9,000 patients of the training set (supposing 15% are severe cases).

 Last edited by: simon.j on Aug. 15, 2023, 12:55 p.m., edited 3 times in total.

Re: Code base structure for submitting to the Final Phase  

  By: LuukBoulogne on March 18, 2022, 10:02 a.m.

Hi Simon,

Sorry for the long wait to get the answer to these questions. These have now been answered in the Challenge overview.

Best, Luuk