Submission Failure: Error Analysis and Possibility of Modifying requirements.txt

Re: Submission Failure: Error Analysis and Possibility of Modifying requirements.txt  

  By: drepeeters on June 23, 2025, 11:34 a.m.

Dear Benito,

The Logs only indicate an error regarding the time limit. No further information is provided, so I am not able to indicate which process in your algorithm is the bottleneck here.

Unfortunately, such an error will not be of sufficient reason to request the GPU with more VRAM. I would advise you to investigate any bottlenecks and see if you can overcome them.

Kind regards,
Dre Peeters

Re: Submission Failure: Error Analysis and Possibility of Modifying requirements.txt  

  By: MVinet on June 25, 2025, 11:46 p.m.

Dear Dre,

I have been having similar issues with running docker images successfully to the challenge. I am not sure what the issue could be, as running the do_test_run.sh script is successful on my local computer. Could you please share the error logs for the unsuccessful submissions I have had thus far to the sanity check submission? Thank you!

Best,

Micah

Re: Submission Failure: Error Analysis and Possibility of Modifying requirements.txt  

  By: drepeeters on June 26, 2025, 6:32 a.m.

Dear Micah,

Here are the logs of your latest submission.

2025-06-25T23:33:10.987000+00:00 /home/user/.local/lib/python3.10/site-packages/torch/utils/_pytree.py:185: FutureWarning: optree is installed but the version is too old to support PyTorch Dynamo in C++ pytree. C++ pytree support is disabled. Please consider upgrading optree using `python3 -m pip install --upgrade 'optree>=0.13.0'`.
2025-06-25T23:33:10.987000+00:00   warnings.warn(
2025-06-25T23:33:17.991000+00:00 [INFO][23:33:17] Loading model: histct
2025-06-25T23:33:33.996000+00:00 Traceback (most recent call last):
2025-06-25T23:33:33.996000+00:00   File "/opt/app/inference.py", line 56, in <module>
2025-06-25T23:33:33.996000+00:00     run(model_name="histct")
2025-06-25T23:33:33.996000+00:00   File "/opt/app/inference.py", line 49, in run
2025-06-25T23:33:33.996000+00:00     "probability": float(probs[i])
2025-06-25T23:33:33.996000+00:00 TypeError: 'float' object is not subscriptable

Kind regards,
Dre

 Last edited by: drepeeters on June 26, 2025, 6:32 a.m., edited 1 time in total.

Re: Submission Failure: Error Analysis and Possibility of Modifying requirements.txt  

  By: MVinet on June 27, 2025, 4:14 a.m.

Hi Dre,

Thank you for the quick reply. Our team was able to correct the model and run it successfully.

We are trying to run a different model for submission, and again have run into an error on grand challenge, even though the do_test_run.sh script works on our local environment. Could you please provide the error log for our latest submission again? Thank you.

Best,

Micah

Re: Submission Failure: Error Analysis and Possibility of Modifying requirements.txt  

  By: drepeeters on June 27, 2025, 5:56 a.m.

Dear Micah,

It seems your submission did not produce the output file.
Here are the logs of your latest submission:

Output file 'lung-nodule-malginancy-likelihoods.json' was not produced

Please reach out, if you need further assistance.

Kind regards,
Dre Peeters