Issue on final leaderboards with baseline method ¶
By: mart.vanrijthoven on June 24, 2022, 12:18 p.m.
Dear All,
We have spotted an issue in the baseline algorithm causing trouble on the final leaderboards. In particular, the following code lines are the cause of the problem:
if ratio > 50.: wsi_patch_indexes = skimage.morphology.remove_small_objects(((wsi_patch == bulk_class)), min_size=mm2_to_px(0.005, spacing), connectivity=2) wsi_patch[wsi_patch_indexes==False] = 0 kernel_diameter = dist_to_px(1000, spacing) min_size_px = mm2_to_px(min_size, spacing)
If you have based your algorithm on the baseline algorithm and have not changed this part, please contact us.
Witali Aswolinskiy witali.aswolinskiy@radboudumc.nl
Mart van Rijthoven mart.vanrijthoven@radboudumc.nl
Francesco Ciompi francesco.ciompi@radboudumc.nl
Please put us all in cc.
Best wishes, Tiger