About data in docker

Hi. Can I use pre-processed data in docker? Like a bed removal operation on the data. Or does it have to be raw data?

Hi, Sure, you can read the raw data first, and then apply your designed pre-processing method to deal with the raw data. But the output shape of your method must equal the shape of the raw data. BTW, all images in the validation set have been cropped based on the body masks (not publicly available) to reduce the memory cost (the grand challenge platform just provides the maximum GPU memory of 15G ). Best, Xiangde Luo.

Thanks for your reply. You mean, in the final testing phase (unpublished data) there is no information about beds? The validation datasets retain the bed information in the currently given data.

Hi, No, all images in the validation and testing sets have been cropped based on the body masks (not publicly available) to reduce the memory cost (the grand challenge platform just provides the maximum GPU memory of 15G ), before the crop process, the shape of each patient in slice level should be 1024 x 1024 or 512 x512. Best, Xiangde Luo.