MedSAM2 lung nodule segmentation masks

MedSAM2 lung nodule segmentation masks  

  By: junma on April 24, 2025, 3:09 a.m.

Dear Organizers,

We generated segmentation masks for all lung nodules with MedSAM2 Lesion CT model, which could be useful for participants. https://huggingface.co/datasets/wanglab/LUNA25-MedSAM2

Thanks for organizing the great challenge and making the invaluable data publicly available.

Best regards, Jun

Re: MedSAM2 lung nodule segmentation masks  

  By: bogdanobreja on April 24, 2025, 11:40 a.m.

Dear Jun,

Thanks for publishing the MedSAM2 segmentations masks! We appreciate your support and hope other participants will find them helpful in their work.

Kind Regards, Bogdan.

Re: MedSAM2 lung nodule segmentation masks  

  By: junma on April 24, 2025, 8:36 p.m.

Dear Bogdan,

Thank you so much!

It would be highly appreciated if you could mention this on the dataset page.

Best regards, Jun

Re: MedSAM2 lung nodule segmentation masks  

  By: Joseph00 on June 1, 2025, 9:16 a.m.

Dear Jun,

Thank you very much for sharing this valuable resource and for your contribution to the community.

I attempted to load the dataset from Hugging Face using:

from datasets import load_dataset dataset = load_dataset("wanglab/LUNA25-MedSAM2")

However, I encountered the following error:

DataFilesNotFoundError: No (supported) data files found in wanglab/LUNA25-MedSAM2

It seems that the dataset repository does not currently contain the actual data files, or they might not be accessible via the standard load_dataset method.

Could you please confirm whether the data files are available in the repository, or let us know how to access them correctly?

Thanks again for your work and for making this resource available!

Best regards,

Giuseppe

 Last edited by: Joseph00 on June 1, 2025, 9:17 a.m., edited 1 time in total.